26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 - Meeting Abstracts - Antwerp, Belgium. 15–20 July 2017

This work was produced as part of the activities of FAPESP Research,\ud Disseminations and Innovation Center for Neuromathematics (grant\ud 2013/07699-0, S. Paulo Research Foundation). NLK is supported by a\ud FAPESP postdoctoral fellowship (grant 2016/03855-5). ACR is partially\ud supported by a CNPq fellowship (grant 306251/2014-0)

A Novel Multiscale Gaussian-Matched Filter Using Neural Networks for the Segmentation of X-Ray Coronary Angiograms

The accurate and efficient segmentation of coronary arteries in X-ray angiograms represents an essential task for computer-aided diagnosis. This paper presents a new multiscale Gaussian-matched filter (MGMF) based on artificial neural networks. The proposed method consists of two different stages. In the first stage, MGMF is used for detecting vessel-like structures while reducing image noise. The results of MGMF are compared with those obtained using six GMF-based detection methods in terms of the area (Az) under the receiver operating characteristic (ROC) curve. In the second stage, ten thresholding methods of the state of the art are compared in order to classify the magnitude of the multiscale Gaussian response into vessel and nonvessel pixels, respectively. The accuracy measure is used to analyze the segmentation methods, by comparing the results with a set of 100 X-ray coronary angiograms, which were outlined by a specialist to form the ground truth. Finally, the proposed method is compared with seven state-of-the-art vessel segmentation methods. The vessel detection results using the proposed MGMF method achieved an Az=0.9357 with a training set of 50 angiograms and Az=0.9362 with the test set of 50 images. In addition, the segmentation results using the intraclass variance thresholding method provided a segmentation accuracy of 0.9568 with the test set of coronary angiograms

LRSE-Net: Lightweight Residual Squeeze-and-Excitation Network for Stenosis Detection in X-ray Coronary Angiography

Coronary heart disease is the primary cause of death worldwide. Among these, ischemic heart disease and stroke are the most common diseases induced by coronary stenosis. This study presents a Lightweight Residual Squeeze-and-Excitation Network (LRSE-Net) for stenosis classification in X-ray Coronary Angiography images. The proposed model employs redundant kernel deletion and tensor decomposition by Depthwise Separable Convolutions to reduce the model parameters up to 48.6 x concerning a Vanilla Residual Squeeze-and-Excitation Network. Furthermore, the reduction ratios of each Squeeze-and-Excitation module are optimized individually to improve the feature recalibration. Experimental results for Stenosis Detection on the publicly available Deep Stenosis Detection Dataset and Angiographic Dataset demonstrate that the proposed LRSE-Net achieves the best Accuracy—0.9549/0.9543, Sensitivity—0.6320/0.8792, Precision—0.5991/0.8944, and F1-score—0.6103/0.8944, as well as competitive Specificity of 0.9620/0.9733

Transfer Learning for Stenosis Detection in X-ray Coronary Angiography

Coronary artery disease is the most frequent type of heart disease caused by an abnormal narrowing of coronary arteries, also called stenosis or atherosclerosis. It is also the leading cause of death globally. Currently, X-ray Coronary Angiography (XCA) remains the gold-standard imaging technique for medical diagnosis of stenosis and other related conditions. This paper presents a new method for the automatic detection of coronary artery stenosis in XCA images, employing a pre-trained (VGG16, ResNet50, and Inception-v3) Convolutional Neural Network (CNN) via Transfer Learning. The method is based on a network-cut and fine-tuning approach. The optimal cut and fine-tuned layers were selected following 20 different configurations for each network. The three networks were fine-tuned using three strategies: only real data, only artificial data, and artificial with real data. The synthetic dataset consists of 10,000 images (80% for training, 20% for validation) produced by a generative model. These different configurations were analyzed and compared using a real dataset of 250 real XCA images (125 for testing and 125 for fine-tuning), regarding their randomly initiated CNNs and a fourth custom CNN, trained as well with artificial and real data. The results showed that pre-trained VGG16, ResNet50, and Inception-v3 cut on an early layer and fine-tuned, overcame the referencing CNNs performance. Specifically, Inception-v3 provided the best stenosis detection with an accuracy of 0.95, a precision of 0.93, sensitivity, specificity, and F1 score of 0.98, 0.92, and 0.95, respectively. Moreover, a class activation map is applied to identify the high attention regions for stenosis detection

Eigen-Gradients for Traffic Sign Recognition

Traffic sign detection and recognition systems include a variety of applications like autonomous driving, road sign inventory, and driver support systems. Machine learning algorithms provide useful tools for traffic sign identification tasks. However, classification algorithms depend on the preprocessing stage to obtain high accuracy rates. This paper proposes a road sign characterization method based on oriented gradient maps and the Karhunen-Loeve transform in order to improve classification performance. Dimensionality reduction may be important for portable applications on resource constrained devices like FPGAs; therefore, our approach focuses on achieving a good classification accuracy by using a reduced amount of attributes compared to some state-of-the-art methods. The proposed method was tested using German Traffic Sign Recognition Benchmark, reaching a dimensionality reduction of 99.3% and a classification accuracy of 95.9% with a Multi-Layer Perceptron

Vascular Structure Identification in Intraoperative 3D Contrast-Enhanced Ultrasound Data

In this paper, a method of vascular structure identification in intraoperative 3D Contrast-Enhanced Ultrasound (CEUS) data is presented. Ultrasound imaging is commonly used in brain tumor surgery to investigate in real time the current status of cerebral structures. The use of an ultrasound contrast agent enables to highlight tumor tissue, but also surrounding blood vessels. However, these structures can be used as landmarks to estimate and correct the brain shift. This work proposes an alternative method for extracting small vascular segments close to the tumor as landmark. The patient image dataset involved in brain tumor operations includes preoperative contrast T1MR (cT1MR) data and 3D intraoperative contrast enhanced ultrasound data acquired before (3D-iCEUS s t a r t ) and after (3D-iCEUS e n d ) tumor resection. Based on rigid registration techniques, a preselected vascular segment in cT1MR is searched in 3D-iCEUS s t a r t and 3D-iCEUS e n d data. The method was validated by using three similarity measures (Normalized Gradient Field, Normalized Mutual Information and Normalized Cross Correlation). Tests were performed on data obtained from ten patients overcoming a brain tumor operation and it succeeded in nine cases. Despite the small size of the vascular structures, the artifacts in the ultrasound images and the brain tissue deformations, blood vessels were successfully identified

Production de bioénergies à partir de déchets: Exemples du biométhane et du biohydrogène

Ce nouveau siècle présente plusieurs défis environnementaux: La distribution d'eau potable, le réchauffement planétaire et l'obtention de nouvelles sources d'énergie en substitution des combustibles fossiles en sont les plus cruciaux. Ces deux derniers sont intimement liés car la majeure partie du dioxyde de carbone (CO$_{2})$, considéré comme le principal responsable de l'effet de serre, est issu de l'utilisation de combustibles fossiles. Ainsi, les nouvelles sources d'énergie devront avoir comme caractéristique principale un bilan presque nul en CO2. Parmi elles, les voies de production de bioénergie à partir de déchets sont tout particulièrement intéressantes: Notamment, une première voie, relativement ancienne, est liée à la production de méthane par digestion anaérobie. Une seconde possibilité, beaucoup plus récente et innovante, repose sur la production d'hydrogène par des écosystèmes microbiens

Automatic Segmentation of Coronary Arteries in X-ray Angiograms using Multiscale Analysis and Artificial Neural Networks

This paper presents a novel method for the automatic segmentation of coronary arteries in X-ray angiograms, based on multiscale analysis and neural networks. The multiscale analysis is performed by using Gaussian filters in the spatial domain and Gabor filters in the frequency domain, which are used as inputs by a multilayer perceptron (MLP) for the enhancement of vessel-like structures. The optimal design of the MLP is selected following a statistical comparative analysis, using a training set of 100 angiograms, and the area under the ROC curve ( A z ) for assessment of the detection performance. The detection results of the proposed method are compared with eleven state-of-the-art blood vessel enhancement methods, obtaining the highest performance of A z = 0.9775 , with a test set of 30 angiograms. The database of 130 X-ray coronary angiograms has been outlined by a specialist and approved by a medical ethics committee. On the other hand, the vessel extraction technique was selected from fourteen binary classification algorithms applied to the multiscale filter response. Finally, the proposed segmentation method is compared with twelve state-of-the-art vessel segmentation methods in terms of six binary evaluation metrics, where the proposed method provided the most accurate coronary arteries segmentation with a classification rate of 0.9698 and Dice coefficient of 0.6857 , using the test set of angiograms. In addition to the experimental results, the performance in the detection and segmentation steps of the proposed method have also shown that it can be highly suitable for systems that perform computer-aided diagnosis in X-ray imaging